Default version of Rosetta upgraded to 2.1 (Biowulf)

The default version of Rosetta has been changed from 2.0 to 2.1.  The
new version has about 3 times as many options as the old version, and
some of the supplemental scripts are broken in minor ways.  Still, the
new version has several great features, such as ligand and DNA modeling,
and better control of restraints/constraints.  And it is no longer
burdened by hard-coded sequence length limits.

The Rosetta web page on biowulf
(http://biowulf.nih.gov/apps/Rosetta.html) now has information regarding
version 2.1.  The web page for version 2.0 is still available
(http://biowulf.nih.gov/apps/Rosetta2.0.html).

A single swarm interface script, "rosetta_swarm", has been created to
simplify the generation of decoys on the cluster.  This script allows
monitoring of run times and scores during the swarm run, as well as
displaying Rosetta option help.  For more information, see the web page
or type "rosetta_swarm -help" at the biowulf prompt.

As always, let us know if there are any problems or bugs.

Dr. David Hoover, Computational Biologist
Helix Systems Staff, DCSS, CIT, NIH
Bldg. 12B, Rm. 2N207, Bethesda, MD 20892
Ph: 301-435-2986  Email: hooverdm@mail.nih.gov