Sequence Variant Analyzer (SVA) on Helix
SVA is a computer software project designed to annotate, visualize, and analyze the genetic variants identified through next-generation sequencing studies, including whole-genome sequencing (WGS) and exome sequencing studies.
Programs location
/usr/local/sva
How To Use
SVA example project below can be run on Helix. However, if user wants to perform new annotations with 1000 Human Genome data, DO NOT run on Helix. Please apply for a biowulf account and request a g72 node since 48 GB of RAM or more is required. See http://biowulf.nih.gov/apps/sva.html
Example
helix $ cd /home/userID
helix $ /usr/local/sva/SequenceVariantAnalyzer.sh&
Then follow the steps from step 2 of http://biowulf.nih.gov/apps/sva.html
