Miscellaneous executables and tools for displaying, evaluating, manipulating, and dealing with scientific data.
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis. To use, type fastqc at the prompt.
GnuPlot (4.4.3) [Helix] [Biowulf] [Sciware]
Gnuplot is a command-driven interactive function plotting program. It can be used to plot 2D and 3D plots in many different formats. To use, type gnuplot at the prompt.
Grace (5.99.0) [Helix] [Biowulf]
Grace is a WYSIWYG 2D plotting tool for the X-Window system. It is a successor to Xmgr. To use, type xmgrace at the prompt.
GRI (2.12.23) [Helix]
IGV (2.3.8) [Helix]
The Integrative Genomics Viewer is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. To use, type the command igv at the prompt.
IGVTools (2.3.9) [Helix]
IGVTools IGVTools provides utilities for working with ascii file formats used by IGV. To use, type the command igvtools at the prompt.
quip compresses a file of next-generation sequencing data which can be FASTQ, SAM, or BAM format.