Miscellaneous executables and tools for displaying, evaluating, manipulating, and dealing with scientific data.
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis. To use, type fastqc at the prompt.
GnuPlot (4.6.4) [Helix] [Biowulf] [Sciware]
Gnuplot is a command-driven interactive function plotting program. It can be used to plot 2D and 3D plots in many different formats. To use, first type module load gnuplot at the prompt, then type gnuplot.
Grace (5.99.0) [Helix] [Biowulf]
Grace is a WYSIWYG 2D plotting tool for the X-Window system. It is a successor to Xmgr. To use, type xmgrace at the prompt.
GRI (2.12.23) [Helix]
IGV (2.3.20) [Helix]
The Integrative Genomics Viewer is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. To use, first type module load igv at the prompt, then type igv.
IGVTools (2.3.20) [Helix]
IGVTools IGVTools provides utilities for working with ascii file formats used by IGV. To use, first type module load igvtools at the prompt, then type igvtools.
quip compresses a file of next-generation sequencing data which can be FASTQ, SAM, or BAM format.