The objective of the structure-modeling package, Jackal, is to provide user-friendly and efficient tools for building, refining, manipulating and reconstructing protein structures. Jackal is a collection of programs designed for the modeling and analysis of protein structures. Its core program is a versatile homology modeling package nest.
How to Use
Coot uses environment modules. Typemodule load Jackal
Copy file "jackal.dir" from $JACKALDIR/bin to your working directory and edit it to include any directories containing pdb files.
Type "nest", "scap", or "loopy" at the commandline.