High-Performance Computing at the NIH

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Jackal

Description

The objective of the structure-modeling package, Jackal, is to provide user-friendly and efficient tools for building, refining, manipulating and reconstructing protein structures. Jackal is a collection of programs designed for the modeling and analysis of protein structures. Its core program is a versatile homology modeling package nest.

How to Use

Coot uses environment modules. Type

module load Jackal

Copy file "jackal.dir" from $JACKALDIR/bin to your working directory and edit it to include any directories containing pdb files.

Type "nest", "scap", or "loopy" at the commandline.

Documentation