Scientific Databases

Sorted by Last Update /database /type /format

0Rat GenomeRat Genome2007-12-29
1GenbankGenbank2009-10-21
2Rat GenomeRat Genome2007-12-29
3Human GenomeHuman Genome2009-07-23
4Mouse GenomeMouse Genome2009-10-01
5UniProtUniProt2009-11-04
6SwissProtSwissProt2009-11-19
7SwissProtSwissProt2009-11-24
8SwissProtSwissProt2009-11-08
9Refseq Other GenomicRefseq Other Genomic2009-11-17
10Chicken GenomeChicken Genome2007-12-30
11ESTEST2009-10-30
12EST - humanEST - human2009-11-19
13EST - othersEST - others2009-11-19
14NCBI ntNCBI nt2009-11-18
15HTGsHTGs2009-11-17
16EST - mouseEST - mouse2009-11-19
17RefseqaaRefseqaa2009-11-18
18Refseq Human GenomicRefseq Human Genomic2009-11-19
19Cow GenomeCow Genome2008-03-24
20Chicken GenomeChicken Genome2007-12-30
21GenPeptGenPept2009-10-28
22Dog GenomeDog Genome2007-12-30
23Cow GenomeCow Genome2008-03-24
24GP_NewGP_New2009-11-24
25NCBI nrNCBI nr2009-11-19
26NCBI nrNCBI nr2009-11-24
27NCBI nrNCBI nr2009-11-24
28EST - mouseEST - mouse2009-11-24
29EST - humanEST - human2009-11-24
30E.ColiE.Coli2005-07-25
31E.ColiE.Coli2005-07-25
32E.ColiE.Coli2006-03-19
33E.ColiE.Coli2005-07-25
34YeastYeast2005-07-25
35YeastYeast2005-07-25
36YeastYeast2005-07-25
37YeastYeast2005-07-25
38DrosophilaDrosophila2005-07-25
39DrosophilaDrosophila2005-07-25
40DrosophilaDrosophila2005-07-25
41DrosophilaDrosophila2005-07-25
42MitoMito2005-07-25
43MitoMito2005-07-25
44MitoMito2005-07-25
45MitoMito2005-07-25
46Human GenomeHuman Genome2006-05-01
47Human GenomeHuman Genome2006-05-01
48Human GenomeHuman Genome2009-07-23
49Mouse GenomeMouse Genome2008-03-25
50Mouse GenomeMouse Genome2008-03-25
51Rat GenomeRat Genome2007-12-29
52Refseq Human RNARefseq Human RNA2009-11-23
53Refseq Mouse RNARefseq Mouse RNA2009-11-23
54Protein Data BankProtein Data Bank2009-11-25
55Protein Data BankProtein Data Bank2009-11-19
56Protein Data BankProtein Data Bank2009-11-24
57Protein Data BankProtein Data Bank2009-11-19
58Protein Data BankProtein Data Bank2009-11-24
59Cambridge Structural DatabaseCambridge Structural Database2009-04-03
60Cow GenomeCow Genome2008-03-24
61PFAMPFAM2009-03-23
62PrositeProsite2009-11-18
63Chicken GenomeChicken Genome2007-12-30
64Zebrafish genomeZebrafish genome2007-12-30
65REBASEREBASE2009-11-18
66Dog GenomeDog Genome2007-12-30
67TransfacTransfac2009-09-04
68Sp_TremblSp_Trembl2009-11-08
69MSDBMSDB2008-06-20
70Human GenomeHuman Genome2006-05-01
71Human GenomeHuman Genome2009-07-23
72Mouse GenomeMouse Genome2009-10-01
73Dog GenomeDog Genome2007-12-30
74Refseq Human ProteinsRefseq Human Proteins2009-11-23
75Refseq Mouse ProteinsRefseq Mouse Proteins2009-11-23
76Mouse GenomeMouse Genome2008-03-26
77Mouse GenomeMouse Genome2009-10-01
78E.ColiE.Coli2009-08-25
79E.ColiE.Coli2009-08-25
80YeastYeast2009-08-25
81DrosophilaDrosophila2009-08-25
82DrosophilaDrosophila2009-08-25
83YeastYeast2009-08-25
84MitoMito2008-10-29
85MitoMito2009-08-25
86NCBI nrNCBI nr2009-11-24
87NCBI ntNCBI nt2009-11-24
88SwissProtSwissProt2009-11-24
89Human Genome RNAHuman Genome RNA2006-04-28
90Human Genome RNAHuman Genome RNA2009-08-11
91Human Genome ProteinsHuman Genome Proteins2006-04-28
92Human Genome RNAHuman Genome RNA2006-05-01
93Human Genome ProteinsHuman Genome Proteins2006-05-01
94Protein Data BankProtein Data Bank2009-11-24
95Protein Data BankProtein Data Bank2009-11-24
96Human Genome ProteinsHuman Genome Proteins2009-08-11
97PrintsPrints2009-11-18
98UniVec CoreUniVec Core2008-04-28
99Refseq Human RNARefseq Human RNA2009-11-24
100Mouse Genome RNAMouse Genome RNA2008-03-26
101Mouse Genome ProteinsMouse Genome Proteins2008-03-26
102Mouse Genome ProteinsMouse Genome Proteins2008-03-25
103Mouse Genome RNAMouse Genome RNA2008-03-25
104Refseq Human ProteinsRefseq Human Proteins2009-11-24
105Refseq Mouse ProteinsRefseq Mouse Proteins2009-11-24
106Refseq Mouse RNARefseq Mouse RNA2009-11-24
107NCBI ntNCBI nt2009-11-24
108EST - humanEST - human2009-11-24
109EST - mouseEST - mouse2009-11-24
110Mouse Genome ProteinsMouse Genome Proteins2008-03-25
111Mouse Genome RNAMouse Genome RNA2008-03-25
112Refseq Mouse ProteinsRefseq Mouse Proteins2009-11-24
113Refseq Human ProteinsRefseq Human Proteins2009-11-24
114NIH-SpecificNIH-Specific2009-11-13
115Refseq Other GenomicRefseq Other Genomic2009-11-24
116RefseqntRefseqnt2009-11-18
117E.ColiE.Coli2005-07-25
118Refseq Human GenomicRefseq Human Genomic2009-11-24
119Gb_NewGb_New2009-11-24
120Refseq Mouse RNARefseq Mouse RNA2009-11-24
121Refseq Human RNARefseq Human RNA2009-11-24
122Zebrafish genomeZebrafish genome2007-12-30
123Zebrafish genomeZebrafish genome2007-12-30
124Rhesus genomeRhesus genome2007-12-29
125Rhesus genomeRhesus genome2007-12-29
126Rhesus genomeRhesus genome2007-12-29
127Drosophila genomeDrosophila genome2009-07-17

Database	Type	Format	Location on the Helix Systems	Source	Last updated
Protein Data Bank	3-D	PDB	/pdb/pdb	PDB	25 Nov 2009
Refseq Mouse RNA	Nuc	Fasta	/fdb/fastadb/ref.mouse.rna.fas	NCBI	24 Nov 2009
Refseq Mouse Proteins	Prot	Fasta	/fdb/fastadb/ref.mouse.protein.fas	NCBI	24 Nov 2009
Refseq Human RNA	Nuc	Fasta	/fdb/fastadb/ref.human.rna.fas	NCBI	24 Nov 2009
Refseq Human Proteins	Prot	Fasta	/fdb/fastadb/ref.human.protein.fas	NCBI	24 Nov 2009
Refseq Mouse RNA	Nuc	WU-Blast	/fdb/wublastdb/ref.mouse.rna	NCBI	24 Nov 2009
Refseq Mouse Proteins	Prot	WU-Blast	/fdb/wublastdb/ref.mouse.protein	NCBI	24 Nov 2009
Refseq Human RNA	Nuc	WU-Blast	/fdb/wublastdb/ref.human.rna	NCBI	24 Nov 2009
Refseq Human Proteins	Prot	WU-Blast	/fdb/wublastdb/ref.human.protein	NCBI	24 Nov 2009
Protein Data Bank	Nuc	WU-Blast	/fdb/wublastdb/pdb.nt	NCBI	24 Nov 2009
Protein Data Bank	Prot	WU-Blast	/fdb/wublastdb/pdb.aa	NCBI	24 Nov 2009
Protein Data Bank	Nuc	Fasta	/fdb/fastadb/pdb.nt.fas	NCBI	24 Nov 2009
Protein Data Bank	Prot	Fasta	/fdb/fastadb/pdb.aa.fas	NCBI	24 Nov 2009
Refseq Other Genomic	Nuc	Fasta	/fdb/fastadb/ref.other.genomic.fas	NCBI	24 Nov 2009
GP_New	Prot	EMBOSS	/fdb/embossdb/gpnew.new	NCIFCRF	24 Nov 2009
Gb_New	Nuc	EMBOSS	/fdb/embossdb/gbnew.new	NCBI	24 Nov 2009
Refseq Human Genomic	Nuc	Fasta	/fdb/fastadb/ref.human.genomic.fas	NCBI	24 Nov 2009
SwissProt	Prot	WU-Blast	/fdb/wublastdb/swissprot.aa	NCBI	24 Nov 2009
SwissProt	Prot	Fasta	/fdb/fastadb/swissprot.aa.fas	NCBI	24 Nov 2009
NCBI nr	Prot	Fasta	/fdb/fastadb/nr.aa.fas	NCBI	24 Nov 2009
NCBI nt	Nuc	WU-Blast	/fdb/wublastdb/nt	NCBI	24 Nov 2009
NCBI nr	Prot	WU-Blast	/fdb/wublastdb/nr	NCBI	24 Nov 2009
EST - mouse	Nuc	WU-Blast	/fdb/wublastdb/est_mouse	NCBI	24 Nov 2009
EST - human	Nuc	WU-Blast	/fdb/wublastdb/est_human	NCBI	24 Nov 2009
NCBI nt	Nuc	Fasta	/fdb/fastadb/nt.fas	NCBI	24 Nov 2009
NCBI nr	Prot	Mascot	biospec.nih.gov	NCBI	24 Nov 2009
EST - mouse	Nuc	Fasta	/fdb/fastadb/est_mouse.fas	NCBI	24 Nov 2009
EST - human	Nuc	Fasta	/fdb/fastadb/est_human.fas	NCBI	24 Nov 2009
Refseq Mouse RNA	Nuc	Blast	/fdb/blastdb/mouse.rna	NCBI	23 Nov 2009
Refseq Mouse Proteins	Prot	Blast	/fdb/blastdb/mouse.protein	NCBI	23 Nov 2009
Refseq Human RNA	Nuc	Blast	/fdb/blastdb/human.rna	NCBI	23 Nov 2009
Refseq Human Proteins	Prot	Blast	/fdb/blastdb/human.protein	NCBI	23 Nov 2009
Protein Data Bank	Nuc	Blast	/fdb/blastdb/pdbnt	NCBI	19 Nov 2009
Protein Data Bank	Prot	Blast	/fdb/blastdb/pdbaa	NCBI	19 Nov 2009
Refseq Human Genomic	Nuc	Blast	/fdb/blastdb/human_genomic	NCBI	19 Nov 2009
EST - mouse	Nuc	Blast	/fdb/blastdb/est_mouse	NCBI	19 Nov 2009
SwissProt	Prot	Blast	/fdb/blastdb/swissprot	NCBI	19 Nov 2009
NCBI nr	Prot	Blast	/fdb/blastdb/nr	NCBI	19 Nov 2009
EST - others	Nuc	Blast	/fdb/blastdb/est_others	NCBI	19 Nov 2009
EST - human	Nuc	Blast	/fdb/blastdb/est_human	NCBI	19 Nov 2009
REBASE	Enzymes	EMBOSS	used internally by Emboss	REBASE	18 Nov 2009
Prosite	Patterns	EMBOSS	used internally by Emboss	Expasy	18 Nov 2009
NCBI nt	Nuc	Blast	/fdb/blastdb/nt	NCBI	18 Nov 2009
Refseqaa	Prot	EMBOSS	/fdb/embossdb/refseqaa.new	NCBI	18 Nov 2009
Refseqnt	Nuc	EMBOSS	/fdb/embossdb/refseqnt.new	NCBI	18 Nov 2009
Prints	Patterns	EMBOSS	used internally by Emboss	EBI	18 Nov 2009
Refseq Other Genomic	Nuc	Blast	/fdb/blastdb/other_genomic	NCBI	17 Nov 2009
HTGs	Nuc	Blast	/fdb/blastdb/htgs	NCBI	17 Nov 2009
NIH-Specific	Prot	Mascot	biospec.nih.gov	NIH	13 Nov 2009
Sp_Trembl	Prot	Mascot	biospec.nih.gov	Expasy	08 Nov 2009
SwissProt	Prot	Mascot	biospec.nih.gov	Expasy	08 Nov 2009
UniProt	Prot	EMBOSS	/fdb/embossdb/uniprot	Uniprot	04 Nov 2009
EST	Nuc	EMBOSS	/fdb/embossdb/est.new	NCBI	30 Oct 2009
GenPept	Prot	EMBOSS	/fdb/embossdb/genpept.new	NCIFCRF	28 Oct 2009
Genbank	Nuc	EMBOSS	/fdb/embossdb/genbank.new	NCBI	21 Oct 2009
Mouse Genome	Nuc	MySQL	NIH mirror of UCSC genome browser	UCSC	01 Oct 2009
Mouse Genome	Annotations	MySQL	NIH mirror of UCSC genome browser	UCSC	01 Oct 2009
Mouse Genome	Prot	MySQL	NIH mirror of UCSC genome browser	UCSC	01 Oct 2009
Transfac	Info	EMBOSS	used internally by Emboss	Biobase	04 Sep 2009
Yeast	Nuc	WU-Blast	/fdb/wublastdb/yeast.nt	NCBI	25 Aug 2009
Yeast	Prot	WU-Blast	/fdb/wublastdb/yeast.aa	NCBI	25 Aug 2009
Mito	Nuc	WU-Blast	/fdb/wublastdb/mito.nt	NCBI	25 Aug 2009
E.Coli	Nuc	WU-Blast	/fdb/wublastdb/ecoli.nt	NCBI	25 Aug 2009
E.Coli	Prot	WU-Blast	/fdb/wublastdb/ecoli.aa	NCBI	25 Aug 2009
Drosophila	Nuc	WU-Blast	/fdb/wublastdb/drosoph.nt	NCBI	25 Aug 2009
Drosophila	Prot	WU-Blast	/fdb/wublastdb/drosoph.aa	NCBI	25 Aug 2009
Human Genome Proteins	Prot	Blast	/fdb/blastdb/hs_genome.protein	NCBI	11 Aug 2009
Human Genome RNA	Nuc	Blast	/fdb/blastdb/hs_genome.rna	NCBI	11 Aug 2009
Human Genome	Annotations	MySQL	NIH mirror of UCSC genome browser	UCSC	23 Jul 2009
Human Genome	Prot	MySQL	NIH mirror of UCSC genome browser	UCSC	23 Jul 2009
Human Genome	Nuc	MySQL	NIH mirror of UCSC genome browser	UCSC	23 Jul 2009
Drosophila genome	Annotations	MySQL	NIH mirror of UCSC genome browser	UCSC	17 Jul 2009
Cambridge Structural Database	3-D	CSD	/local/csd	CCDC	03 Apr 2009
PFAM	Families	PFAM	/fdb/fastadb/pfam	PFAM	23 Mar 2009
Mito	Prot	WU-Blast	/fdb/wublastdb/mito.aa	NCBI	29 Oct 2008
MSDB	Prot	Mascot	biospec.nih.gov	NCBI	20 Jun 2008
UniVec Core	Nuc	Blast	/fdb/blastdb/univec_core	NCBI	28 Apr 2008
Mouse Genome	Nuc	Fasta	/fdb/genome/mouse-mar2006/	UCSC	26 Mar 2008
Mouse Genome Proteins	Prot	Blast	/fdb/blastdb/mouse_genome.protein	NCBI	26 Mar 2008
Mouse Genome RNA	Nuc	Blast	/fdb/blastdb/mouse_genome.rna	NCBI	26 Mar 2008
Mouse Genome	Nuc	WU-Blast	/fdb/wublastdb/mouse_genome	UCSC	25 Mar 2008
Mouse Genome	Nuc	Blast	/fdb/blastdb/mouse_genome	UCSC	25 Mar 2008
Mouse Genome Proteins	Prot	WU-Blast	/fdb/wublastdb/mouse_genome.protein	NCBI	25 Mar 2008
Mouse Genome Proteins	Prot	Fasta	/fdb/fastadb/mouse_genome.protein.fas	NCBI	25 Mar 2008
Mouse Genome RNA	Nuc	Fasta	/fdb/fastadb/mouse_genome.rna.fas	NCBI	25 Mar 2008
Mouse Genome RNA	Nuc	WU-Blast	/fdb/wublastdb/mouse.rna	NCBI	25 Mar 2008
Cow Genome	Prot	MySQL	NIH mirror of UCSC genome browser	UCSC	24 Mar 2008
Cow Genome	Nuc	MySQL	NIH mirror of UCSC genome browser	UCSC	24 Mar 2008
Cow Genome	Annotations	MySQL	NIH mirror of UCSC genome browser	UCSC	24 Mar 2008
Chicken Genome	Prot	MySQL	NIH mirror of UCSC Genome Browser	UCSC	30 Dec 2007
Chicken Genome	Nuc	MySQL	NIH mirror of UCSC Genome Browser	UCSC	30 Dec 2007
Chicken Genome	Annotations	MySQL	NIH mirror of UCSC Genome Browser	UCSC	30 Dec 2007
Zebrafish genome	Prot	MySQL	NIH mirror of UCSC genome browser	UCSC	30 Dec 2007
Zebrafish genome	Nuc	MySQL	NIH mirror of UCSC genome browser	UCSC	30 Dec 2007
Zebrafish genome	Annotations	MySQL	NIH mirror of UCSC genome browser	UCSC	30 Dec 2007
Dog Genome	Prot	MySQL	NIH mirror of UCSC genome browser	UCSC	30 Dec 2007
Dog Genome	Nuc	MySQL	NIH mirror of UCSC genome browser	UCSC	30 Dec 2007
Dog Genome	Annotations	MySQL	NIH mirror of UCSC genome browser	UCSC	30 Dec 2007
Rat Genome	Prot	MySQL	NIH mirror of UCSC genome browser	UCSC	29 Dec 2007
Rat Genome	Nuc	MySQL	NIH mirror of UCSC genome browser	UCSC	29 Dec 2007
Rat Genome	Annotations	MySQL	NIH mirror of UCSC genome browser	UCSC	29 Dec 2007
Rhesus genome	Prot	MySQL	NIH mirror of UCSC genome browser	UCSC	29 Dec 2007
Rhesus genome	Nuc	MySQL	NIH mirror of UCSC genome browser	UCSC	29 Dec 2007
Rhesus genome	Annotations	MySQL	NIH mirror of UCSC genome browser	UCSC	29 Dec 2007
Human Genome	Nuc	WU-Blast	/fdb/wublastdb/hs_genome	UCSC	01 May 2006
Human Genome	Nuc	Fasta	/fdb/genome/human-apr2006/	UCSC	01 May 2006
Human Genome	Nuc	Blast	/fdb/blastdb/hs_genome	UCSC	01 May 2006
Human Genome Proteins	Prot	WU-Blast	/fdb/wublastdb/hs_genome.protein	NCBI	01 May 2006
Human Genome RNA	Nuc	WU-Blast	/fdb/wublastdb/hs_genome.rna	NCBI	01 May 2006
Human Genome Proteins	Prot	Fasta	/fdb/fastadb/hs_genome.protein.fas	NCBI	28 Apr 2006
Human Genome RNA	Nuc	Fasta	/fdb/fastadb/hs_genome.rna.fas	NCBI	28 Apr 2006
E.Coli	Prot	Blast	/fdb/blastdb/ecoli.aa	NCBI	19 Mar 2006
Yeast	Nuc	Fasta	/fdb/fastadb/yeast.nt.fas	NCBI	25 Jul 2005
Yeast	Prot	Fasta	/fdb/fastadb/yeast.aa.fas	NCBI	25 Jul 2005
Yeast	Nuc	Blast	/fdb/blastdb/yeast.nt	NCBI	25 Jul 2005
Yeast	Prot	Blast	/fdb/blastdb/yeast.aa	NCBI	25 Jul 2005
Mito	Nuc	Fasta	/fdb/fastadb/mito.nt.fas	NCBI	25 Jul 2005
Mito	Prot	Fasta	/fdb/fastadb/mito.aa.fas	NCBI	25 Jul 2005
Mito	Nuc	Blast	/fdb/blastdb/mito.nt	NCBI	25 Jul 2005
Mito	Prot	Blast	/fdb/blastdb/mito.aa	NCBI	25 Jul 2005
E.Coli	Nuc	Fasta	/fdb/fastadb/ecoli.nt.fas	NCBI	25 Jul 2005
E.Coli	Prot	Fasta	/fdb/fastadb/ecoli.aa.fas	NCBI	25 Jul 2005
E.Coli	Nuc	Blast	/fdb/blastdb/ecoli.nt	NCBI	25 Jul 2005
E.Coli	Nuc	Blast	/fdb/blastdb/ecoli.nt	NCBI	25 Jul 2005
Drosophila	Nuc	Fasta	/fdb/fastadb/drosoph.nt.fas	NCBI	25 Jul 2005
Drosophila	Prot	Fasta	/fdb/fastadb/drosoph.aa.fas	NCBI	25 Jul 2005
Drosophila	Nuc	Blast	/fdb/blastdb/drosoph.nt	NCBI	25 Jul 2005
Drosophila	Prot	Blast	/fdb/blastdb/drosoph.aa	NCBI	25 Jul 2005