Coot is for macromolecular model building, model completion and validation, particularly suitable for protein modelling using X-ray data.
Coot displays maps and models and allows model manipulations such as idealization, real space refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers, Ramachandran plots, skeletonization, non-crystallographic symmetry and more.
Type module avail Coot at the prompt
How to Use
This application requires an X-Windows connection.
Coot uses environment modules. Typemodule load Coot
then type coot at the prompt, input is menu-driven:[helix]$ coot